Data Sources.

Our algorithm uses genomic expression and transcription factor protein-DNA binding data sources to discover abstractions that we call modules. The expression data was collected from over 500 yeast expression experiments that are publicly available. You can find an excel sheet that describes the 500+ expression experiments results that we have used here. As for binding data, we have used a collection of 106 protein-DNA binding experiments. This data is publicly available from The Young Lab Database. We have also generated a new binding dataset for 14 transcription factors under rapamycin. This data is available from here.