Massachusetts Institute of Technology
Computer Science and Artificial Intelligence Laboratory

• GRAM - We present the GRAM (Genetic RegulAtory Modules) algorithm that identifies modules, collections of genes that share common regulators as well as expression profiles.
• JBD - We present the JBD (Joint Binding Deconvolution) algorithm that detects binding sites based on ChIP-chip data and guides
• GeneProgram motif discovery using sequence data.
• GSE is the Genomic Spatial Events system, a database for storing, visualizing, and analyzing ChIP-based transcription factor binding data and gene expression data.